There are instances where starting the Y-axis not at zero is okay. I'm bad at examples, but zero is used as a baseline. Which means that it would be better to start the Y-axis at another value, it being similar to the baseline.
An example might be the concentration of something, like CO2 molecules in the atmosphere. It is impossible and irrelevant to get to 0. Besides, it's not about the absolute values but the relative values.
It's often true if you want to show the differences between similarly (usually large..) numbers. Whether it is misleading or not tends to be in the presentato and context. The same applies to things like log scales etc...
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