To clarify, I did not elect anything upon picking up the car. The guy at Hertz didn't mention anything about Toll at all. I was charged the all-inclusive fees which was substantially more expensive than the actual toll amount.

In the past, I have rented Hertz cars in many other locations. One time, I was told by a Hertz person, as long as I take out the EZ pass in the PlatePass box attached to the windshield, I would be charged per-usage fees. If I don't take it out, they will charge by plate (which was the same as all-inclusive, because I actually forgot one time before).

Today I called Hertz and was told I need to opt-out of all-inclusive explicitly.