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greentea387 OP t1_iw2g7mz wrote

ESMFold by Meta and AlphaFold by Google's DeepMind

Model Confidence:

dark blue: Very high (pLDDT > 90)

light blue: Confident (90 > pLDDT > 70)

yellow: Low (70 > pLDDT > 50)

orange: Very low (pLDDT < 50)

Protein: Serotonin receptor 2beta

Organism: Gryllus bimaculatus

Protein Sequence: EQKATKVLGVVFFTFVVLWAPFFVLNLVPTVCGEECERRIDHRVFDFVTWLGYASSMVNPIFYTIFNKVFRQAFKKVLTCQYRKKVWRPPA

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draem t1_iw2gfxn wrote

is there any experimental data to compare?

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phriot t1_iw2gytu wrote

It's probably a membrane protein, which would make it difficult to crystalize to get a structure experimentally. That's the promise of software like AlphaFold.

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MyCoffeeTableIsShit t1_iw4iwiq wrote

I would like to introduce you to the world of mesophase crystallisation, good sir.

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iyke7991 t1_iw6g0cs wrote

Advantages?

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MyCoffeeTableIsShit t1_iw6pu0e wrote

It provides an artificial lipid matrix which stabilises multiple domains simultaneously making some membrane proteins more amenable to crystallisation.

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iyke7991 t1_iw8j66b wrote

Ahhh, will need to look into it more. Some cutting edge stuff right there. Biology is way too complex. Endless forever evolving complexity. Absolutely beautiful. Make it stop. 😭😭😂

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greentea387 OP t1_iw2gmao wrote

I don't think so for this protein

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-ZeroRelevance- t1_iw32yzs wrote

Can you post another one which has been experimentally tested to see which one’s more accurate?

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